PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01344.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 264aa    MW: 29736.2 Da    PI: 6.5303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01344.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.6e-2194143255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Rsa1.0_01344.1_g00005.1  94 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 143
                              59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.53E-3493153No hitNo description
PROSITE profilePS5103223.16994151IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2394152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-3294152IPR001471AP2/ERF domain
SMARTSM003801.5E-3694157IPR001471AP2/ERF domain
PRINTSPR003672.1E-1195106IPR001471AP2/ERF domain
PfamPF008471.5E-1495143IPR001471AP2/ERF domain
PRINTSPR003672.1E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MATTMDYYNN KTFQQKTDPF GGELMEALLP FIKSPSTDSP ASAFASYPDV CLTQPIPYGS  60
YHLGSTQTHS FSNHLSPKPV TMKQTGSPPK PTKLYRGVRQ RHWGKWVAEI RLPRNRTRLW  120
LGTFDTAEEA ALAYDKAAYK LRGDFARLNF PNLRGEFGEY QPLQSPVDDK LEAICQSLAE  180
TQKPAKKKKS RRSSTVTAGK QPEEVKPEDY SNVVSPPSTE SYGSPLSDLT FVDTEEEGEQ  240
TWNVNFALEK YPSYEIDWDS ILSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2193159470ATERF1
3gcc_A3e-2193159470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013698143.11e-160PREDICTED: ethylene-responsive transcription factor RAP2-13-like
SwissprotQ9LM151e-111RA213_ARATH; Ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0D3CCD61e-159A0A0D3CCD6_BRAOL; Uncharacterized protein
STRINGBra031371.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.14e-99ERF family protein